miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166871432|gb|FD705592.1|FD705592 GAGGATTGACCGCGCTCATCGCCACGAAGCGAGCAATGGAGCTGCCGCTGTCGCTACTGCTGGCGGTCGTGCTGGCAGCG
GGGGCCGCGAGAGGCGCCCCAGCAGCGGACGCGGTGAAGGGGCTGCCCGGGCTGGAGCCGCAGCCCGCGTTCGCGCACTA
CTCGGGATTCCTGAGCGGGGGCCACGGAGCGCACCTCCACTACTGGTTCGTGGAGTCGGCGCGCAACCCAGCGAGCGACC
CTGTGGTTCTGTGGCTGAATGGCGGGCCCGGCTGCAGCTCCATCGACGGTTTCCTGTCCGAGAATGGGCCCTTCCACGTG
AACAATGACGGGCGGACTCTGTACTACAACAACGACAGTTGGAACCAGGTGGCCAACATCCTGTACCTCGAGTCTCCCGC
TGGCGTGGGATTCTCCTTCTCCGACGACAAGAACTACACCATCGACGACGACCAGGTGGCCGACCGGAACTACGCGGCTC
TCCAGGACTTCTTTGCTAAGTTCCCCGAGTTCTCGGGCAACGATTTCTTTATTTTTGGGGAGAGCTACGGAGGCATCTAC
GTGCCAACCCTGAGCCTGCGCGTCACGACGGGCGCCGCCAAAATCAACTTCAAGGGGTTCGCGGTGGGAAACGGCCTCTC
GAGCTACGCCATCAACGACCAATCGCTCGTCTACTTCGCCTACTACCACGGCCTGTTGGGAGAATCGCTGTGGGCAGACC
TCAACAGCTACTGCTGCAGCGGCGCCAAGTGTAACTTCTACAACAGCTCCTCCAGCGACTGCAAGGAGGCGGTTATGCGG
ACGTTCCACATCGTGTACGAGATCGGCCTCAACGTCTACGCCCTGTA




Most similar to sp|Q3MI05|PPGB_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q3MI05|PPGB_BOVIN Lysosomal protective protein OS=Bos taurus
           GN=CTSA PE=2 SV=1
          Length = 479

 Score =  307 bits (786), Expect = 7e-83
 Identities = 141/244 (57%), Positives = 178/244 (72%)
 Frame = +3

Query: 114 VKGLPGLEPQPAFAHYSGFLSGGHGAHLHYWFVESARNPASDPVVLWLNGGPGCSSIDGF 293
           ++ LPGL  QP+F  YSG+L G     LHYWFVES ++P S PVVLWLNGGPGCSS+DG 
Sbjct: 34  IRFLPGLAKQPSFRQYSGYLKGSGSKRLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGL 93

Query: 294 LSENGPFHVNNDGRTLYYNNDSWNQVANILYLESPAGVGFSFSDDKNYTIDDDQVADRNY 473
           L+E+GPF +  DG TL YN  SWN +AN+LYLESPAGVGFS+SDDK+Y  +D +VA  N+
Sbjct: 94  LTEHGPFLIQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNF 153

Query: 474 AALQDFFAKFPEFSGNDFFIFGESYGGIYVPTLSLRVTTGAAKINFKGFAVGNGLSSYAI 653
            AL+DFF  FPE+ GN+ F+ GESY GIY+PTL++ V    + +N +G AVGNGLSSY  
Sbjct: 154 EALKDFFCLFPEYKGNELFLTGESYAGIYIPTLAVLVMQDPS-MNLQGLAVGNGLSSYEQ 212

Query: 654 NDQSLVYFAYYHGLLGESLWADLNSYCCSGAKCNFYNSSSSDCKEAVMRTFHIVYEIGLN 833
           ND SLVYFAYYHGLLG  LW+ L ++CCS  +CNF+++   +C   +    HIV   GLN
Sbjct: 213 NDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNQCNFHDNKEPECVANLQEVSHIVASSGLN 272

Query: 834 VYAL 845
           +Y L
Sbjct: 273 IYNL 276